RNA-seq and snRNA-seq data
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Deposited into the GEO at the National Center for Biotechnology Information with the accession number GSE223424.
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Deposited into the GEO at the National Center for Biotechnology Information with the accession number GSE267764.
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Public mouse microglial microarray data
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Obtained from table S1 of a previous publication21.
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Public bulk RNA-seq datasets for Tgfbr2cKO
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Used in the analysis with the accession number GSE111385.
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Public bulk RNA-seq datasets for Clec7a+
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Used in the analysis with the accession number GSE101689.
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Public scRNA-seq and snRNA-seq datasets for P9 and P28 cortical microglia
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Used in the analyses (Fig. 1; GSE127449).
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Public mouse brain atlas datasets
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Used in the analyses (Extended Data Fig. 1; http://mousebrain.org/).
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Public 6-month-old mouse brain datasets
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Used in the analyses (Extended Data Fig. 10; GSE98969).
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Public 7-month-old mouse brain datasets
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Used in the analyses (Extended Data Fig. 10, GSE140510).
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Public IFN-responsive MGnD datasets
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Used in the analyses (Extended Data Fig. 11; GSE205569).
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Public human brain datasets
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Used in the analyses (Extended Data Fig. 1; Broad Institute single-cell portal SCP371).
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Provided with this paper.
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