正文
完整参数列表如下：
ct@ehbio:~ $sp_lines.sh
***CREATED BY Chen Tong (chentong_biology@163.com)***
Usage:
/MPATHB/self/s-plot/sp_lines.sh options
Function:
This script is used to draw a line or multiple lines using ggplot2.
You can specify whether or not smooth your line or lines.
Two types of input files are supported, normal matrix or melted matrix format. Column separator for both types of input files is **tab**.
Here is an example of normal matrix format. The first column will be treated as X-axis variables and other columns represents each type of lines. The number of columns is unlimited and names of columns is unlimited.
**Set** column is not needed. If given, (multiple plots in one page) could be displayed.
------------------------------------------------------------
Pos H3K27ac CTCF Enhancer H3K4me3 polII
-5000 8.71298 10.69130 11.7359 10.02510 8.26866
-4000 8.43246 10.76680 11.8442 9.76927 7.78358
-3000 8.25497 10.54410 12.2470 9.40346 6.96859
-2000 7.16265 10.86350 12.6889 8.35070 4.84365
-1000 3.55341 8.45751 12.8372 4.84680 1.26110
0 3.55030 8.50316 13.4152 5.17401 1.50022
1000 7.07502 10.91430 12.3588 8.13909 4.88096
2000 8.24328 10.70220 12.3888 9.47255 7.67968
3000 8.43869 10.41010 11.9760 9.80665 7.94148
4000 8.48877 10.57570 11.6562 9.71986 8.17849
------------------------------------------------------
------------With SET------------------------------------------
Pos H3K27ac CTCF Enhancer H3K4me3 polII Set
-5000 8.71298 10.69130 11.7359 10.02510 8.26866 1
-4000 8.43246 10.76680 11.8442 9.76927 7.78358 1
-3000 8.25497 10.54410 12.2470 9.40346 6.96859 1
-2000 7.16265 10.86350 12.6889 8.35070 4.84365 1
-1000 3.55341 8.45751 12.8372 4.84680 1.26110 1
0 3.55030 8.50316 13.4152 5.17401 1.50022 1
1000 7.07502 10.91430 12.3588 8.13909
